MayaChemTools documentation is free documentation; you can redistribute it and/or modify it under the terms of the GNU FDL as published by the Free Software Foundation.

• README
• AnalyzeSDFilesData.pl
• AnalyzeSequenceFilesData.pl
• AnalyzeTextFilesData.pl
• AtomNeighborhoodsFingerprints.pl
• AtomTypesFingerprints.pl
• CalculatePhysicochemicalProperties.pl
• DBSQLToTextFiles.pl
• DBSchemaTablesToTextFiles.pl
• DBTablesToTextFiles.pl
• DownloadPDBFiles.pl
• EStateIndiciesFingerprints.pl
• ElementalAnalysis.pl
• ElementalAnalysisSDFiles.pl
• ElementalAnalysisTextFiles.pl
• ExtendedConnectivityFingerprints.pl
• ExtractFromPDBFiles.pl
• ExtractFromSDFiles.pl
• ExtractFromSequenceFiles.pl
• ExtractFromTextFiles.pl
• FilterSDFiles.pl
• InfoAminoAcids.pl
• InfoFingerprintsFiles.pl
• InfoNucleicAcids.pl
• InfoPDBFiles.pl
• InfoPeriodicTableElements.pl
• InfoSDFiles.pl
• InfoSequenceFiles.pl
• InfoTextFiles.pl
• JoinSDFiles.pl
• JoinTextFiles.pl
• MACCSKeysFingerprints.pl
• MergeTextFiles.pl
• MergeTextFilesWithSD.pl
• ModifyNewLineChar.pl
• ModifyPDBFiles.pl
• ModifySDFilesDataFields.pl
• ModifyTextFilesFormat.pl
• MolFilesToSD.pl
• OpenFECalculateAbsoluteBindingFreeEnergy.py
• OpenFECalculateAbsoluteHydrationFreeEnergy.py
• OpenFECalculatePartialCharges.py
• OpenFECalculateRelativeBindingFreeEnergy.py
• OpenFECalculateRelativeBindingFreeEnergySepTop.py
• OpenFECalculateRelativeHydrationFreeEnergy.py
• OpenFEGenerateLigandNetwork.py
• OpenMMExecuteMDSimulationProtocol.py
• OpenMMPerformMDSimulation.py
• OpenMMPerformMinimization.py
• OpenMMPerformSimulatedAnnealing.py
• OpenMMPrepareMacromolecule.py
• PathLengthFingerprints.pl
• Psi4CalculateEnergy.py
• Psi4CalculateInteractionEnergy.py
• Psi4CalculatePartialCharges.py
• Psi4CalculateProperties.py
• Psi4GenerateConformers.py
• Psi4GenerateConstrainedConformers.py
• Psi4PerformConstrainedMinimization.py
• Psi4PerformMinimization.py
• Psi4PerformTorsionScan.py
• Psi4VisualizeDualDescriptors.py
• Psi4VisualizeElectrostaticPotential.py
• Psi4VisualizeFrontierOrbitals.py
• PyMOLAlignChains.py
• PyMOLCalculatePhiPsiAngles.py
• PyMOLCalculateProperties.py
• PyMOLCalculateRMSD.py
• PyMOLConvertLigandFileFormat.py
• PyMOLConvertPMLToPSE.py
• PyMOLExtractSelection.py
• PyMOLGenerateRamachandranPlots.py
• PyMOLInfoMacromolecules.py
• PyMOLMutateAminoAcids.py
• PyMOLMutateNucleicAcids.py
• PyMOLSplitChainsAndLigands.py
• PyMOLVisualizeCavities.py
• PyMOLVisualizeCryoEMDensity.py
• PyMOLVisualizeElectronDensity.py
• PyMOLVisualizeFpockets.py
• PyMOLVisualizeInterfaces.py
• PyMOLVisualizeMacromolecules.py
• PyMOLVisualizeSurfaceAndBuriedResidues.py
• RDKitAlignMolecules.py
• RDKitCalculateEnergy.py
• RDKitCalculateMolecularDescriptors.py
• RDKitCalculatePartialCharges.py
• RDKitCalculateRMSD.py
• RDKitClusterMolecules.py
• RDKitCompareMoleculeShapes.py
• RDKitConvertFileFormat.py
• RDKitDrawMolecules.py
• RDKitDrawMoleculesAndDataTable.py
• RDKitEnumerateCompoundLibrary.py
• RDKitEnumerateStereoisomers.py
• RDKitEnumerateTautomers.py
• RDKitFilterChEMBLAlerts.py
• RDKitFilterPAINS.py
• RDKitFilterTorsionLibraryAlerts.py
• RDKitFilterTorsionStrainEnergyAlerts.py
• RDKitGenerateConformers.py
• RDKitGenerateConstrainedConformers.py
• RDKitGenerateMolecularFrameworks.py
• RDKitPerformConstrainedMinimization.py
• RDKitPerformMinimization.py
• RDKitPerformPositionalAnalogueScan.py
• RDKitPerformRGroupDecomposition.py
• RDKitPerformSynthonSpaceSearch.py
• RDKitPerformTorsionScan.py
• RDKitPickDiverseMolecules.py
• RDKitRemoveDuplicateMolecules.py
• RDKitRemoveInvalidMolecules.py
• RDKitRemoveSalts.py
• RDKitSearchFunctionalGroups.py
• RDKitSearchSMARTS.py
• RDKitStandardizeMolecules.py
• SDToMolFiles.pl
• SimilarityMatricesFingerprints.pl
• SimilaritySearchingFingerprints.pl
• SortSDFiles.pl
• SortTextFiles.pl
• SplitSDFiles.pl
• SplitTextFiles.pl
• TextFilesToHTML.pl
• TextFilesToSDFiles.pl
• TopologicalAtomPairsFingerprints.pl
• TopologicalAtomTorsionsFingerprints.pl
• TopologicalAtomTripletsFingerprints.pl
• TopologicalPharmacophoreAtomPairsFingerprints.pl
• TopologicalPharmacophoreAtomTripletsFingerprints.pl
• VinaPerformDocking.py
• VisualizeChemspaceUsingTMAP.py
• The End